CDS

Accession Number TCMCG005C21724
gbkey CDS
Protein Id XP_020269977.1
Location join(64358350..64359169,64359860..64359965,64367221..64367329,64367411..64367464,64367566..64367640,64378380..64378448,64378556..64378639,64378886..64379083,64379238..64379788,64379864..64379993,64381716..64381807,64384131..64384309,64384425..64384627,64384721..64384822,64388625..64388787,64400928..64401220,64401298..64401435,64401579..64401658,64401777..64401876,64401950..64402079,64403054..64403322)
Gene LOC109845173
GeneID 109845173
Organism Asparagus officinalis

Protein

Length 1314aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA376608;
db_source XM_020414388.1
Definition DNA mismatch repair protein MSH6 isoform X1

EGGNOG-MAPPER Annotation

COG_category L
Description Component of the post-replicative DNA mismatch repair system (MMR)
KEGG_TC -
KEGG_Module M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K08737        [VIEW IN KEGG]
EC -
KEGG_Pathway ko01524        [VIEW IN KEGG]
ko03430        [VIEW IN KEGG]
ko05200        [VIEW IN KEGG]
ko05210        [VIEW IN KEGG]
map01524        [VIEW IN KEGG]
map03430        [VIEW IN KEGG]
map05200        [VIEW IN KEGG]
map05210        [VIEW IN KEGG]
GOs GO:0000217        [VIEW IN EMBL-EBI]
GO:0000404        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003684        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006290        [VIEW IN EMBL-EBI]
GO:0006298        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0030983        [VIEW IN EMBL-EBI]
GO:0032135        [VIEW IN EMBL-EBI]
GO:0032300        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043570        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990391        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGCCCCTCTCGCCGCCTCTCCAGCAACGGCCGCTCCCCTCTCGTCCGCAAACAGAGCCAGATCACCACCTTCTTCTCCCCAGGCAAAAACCCCACAGATTCCCCGTGCCCAAAACCTAACCCTAGCCCTAATCCCAATTCCTCAACCGAGAAATCGAAGAAAACCCCTTTGCTCATACCTTCACCTACCAAGCCCAACCCTAAGGCTCCTCCGTCCACCACCGAAAAGAAATCTTTTTCCGAAGATGTGGTTGGAAAAAAGATTAGCGTTTTCTGGCCACTTGATAAAACTTGGTATGATGGGCATGTTAAATCTTTTAATAAGCTCACTGGAAAGCATTTGATCCAGTATGAAGATGCTGAGGAGGAGGTTCTTGATCTTGAGAAGGAGAAGATTGAGTGGGTCAAAGAGGAGGCACCGAGAAAGCTCCGGAGGTTGAAGAGGGTGTCAAGCTCTCCAGTGCCGGAAACGGAAATAGTGAGGGATGGTGTTAATGTAGATGATGATGATGACGGTGAGGATGAGGATTGGGGAAAGGGAGTCGGGGAACATGTTGATAATGATGATTCTAAGGAAGTGGAACTGGAGGAAGAAATTGAGGAGGAAAATGAAAAATCAGCTGCGAAGAGATCTGGAAAGAGGAGTTCTTCTTCTGTTGGATCAGGGAAGAGGAAGAAAGTTGACGTCGAGAAGTTGGGCTGCAGTAAGAAGTTTAGATTTGATGGAGATGGAGAGGGTCCGGGAGATGGGCAGAAGGGTGGTTCTTTGGTAACTCCAATGAGCAAAAGCAGATATTCTACTGTCTTAACTACCAAAGGTAATGCAGGTGGCCAACAGGTAAACAATTTTGGCAGCAACTCAACTGATGATGCAGCTGAGCGGTTTGCGAAACGTGAGGCAGAAAAATTTAGGTTTCTTCAAGGTCACAGGGGACGTAAAGATGCTCGAGGGAAGCGTCCTGAAGATGCGGACTATGATCAGAGAACACTCTTCTTACCTAGTGACTTCTTGAAGAGTTTGTCAGGTTGTCAGAGGCAATGGTGGGAGTTCAAATCAAAGCATATGGATAAGGTTTTGTTGTTTAAGATGGGCAAGTTCTATGAATTGTTTGAAATGGATGCACATATTGGAGCAAAAGAGCTTGGTCTGCAATATATGAAGGGAGATCAACCTCACTGTGGGTTTCCTGAAAAGAATTTTTCAACGAATTTAGAGAAATTGGCAAGAAAGGGATATCGTGTTCTTGTTGTGGAGCAGACTGAAACACCACAACAACTTGAACTTCGCCGAAAAGAGACGGGGTCGAAAGATAAGGTTGTTAAACGGGAAATTTGTGCCATGGTTACAAAGGGAACACTGATCGAAGGAGACTCACTTTTGACAAATCCCGATACTTCATATCTAATGTCAATTACTGAGAAAAGCAACTTCTTAGAGAATCAAAAGAAAGAAAGCATAGTCATAGGCATCTGTTTGGTTGATGTTTCCACAAGCATGTTTATGCTAGGACAGTTCGAAGATGATTCTGAGCGTCACTGCTTATGTTCTATACTGTCGGAATTACGACCTGTAGAAATCATCAAGCCTTCAGAACTGCTCAGTCCTGAAACTGAAAATGTTTTGAAGTACCACACAAGAAATCCATTAATTAATAACTTGGTTCCTTCAGCGGAATTTTGGGATGCTAAAAAAACTATTGACGAGATCAGAAATATTCATTGGGTCCTGACACATTCAACATCAGAATTATCAACTTATGTAAATGGTGACAATTCTGATAATTCAGATACATCGGAGAGACATTCAGGGGGCCTTCCAGACGTTTTATCTGAAGTGGTGACTGCAGGGCCGAATGAATGCTGTACACTTTCTGCTCTTGGTGGTTGTCTTTTTTATTTGAGGCAAGCTTTCCTTGAAGAAGCATTACTCAAGTGTGCTAAGTTTGAAAGACTTCAGTGCAGTGGTTTCTCTGCCACTGCTAAGAGGACACATATGATACTTGATGCAGCAGCACTTGAAAACCTTGAGATATTGGAGAACAAGAAAAATGGAGGCCTCTCTGGGACACTATTTGCGCAATTAAATCATTGTGTCACATCTAATGGGAAAAGGATGCTTAAGAGTTGGCTTGCAAGACCACTATATAACAAGAGTTTAATTTTGGAACGCCAAGATGCCATAGCAGGTTTGAAGGGTACTGGTGTTGCTTCTGCACTTGAATTTCGTAAAGAGTTATTGAGGCTTCCAGACATGGAGCGGTTACTAGCACGCCTCTTTGCTATCTGTGACAGTAATGGAAGAAATGCGAATAGAGTAGTTCTTTATGAAGATGCAGCAAAGAAGCAGCTTCAGGAATTTATTGCTGCTCTTCGGGGTTGCGAAGTGATGATTCAAGCATGCTCCTCCCTGAGTACTATTTTAACTAATACAGAATCAAGTTTGCTTCATCATTTACTGACACCAGGCAAAGGGCTACCTGACGTTTCTTCAGTTTTAAAGCACTTCAAGGAGGCATTTGACTGGATAGAAGCTGAACGTTCAGGGAGGATTATACCTCATGAAGGAGGTGATATTGAATATGATACAGCTTGCAAGACGTTGAGGGACATTGAGTCTTCTCTGAAGAGTTACCTGAAAGAACAACGCAGAATACTTGGGGATTCATCGGTTACTTACGCTACTGTCGGGAAAGATTCATACCTCCTAGAAGTACCCGAAAGCCTGAGTTTGTCTGTCCCCCGGGGATATGAATTATGCTCTTCGAAAAAGGGATACGTTCGATATCGGACACCAGAAATTAAGAAGTATTTGTCAAAACTTGCTCAAGCTGAAGCAGACAGAGAATCTAAATTGAAAAGTATTCTTCAGAGACTATTAGGGCAATTCAGTGAGCACCATAATAAATGGAGGCTGTTGGTTTCTGTAATAGCAGAGCTAGATGTATTGATTAGTCTATCCATTTCAAGTGACTACTATGAAGGACCAACGTGTCGACCAGTTATCAAAGAAATATGCCATTCAAGTGCCAACACTCCTTATATTTCTGCGAAAAATCTGGGGCATCCTGTTCTCAGAAGTGATGCATTAGGAAGAGGTTCTTTTGTTCCCAATGATGTAAATATTGGTGGAGCTGGACATGGAACATTCATCCTTCTTACAGGTCCAAACATGGGTGGTAAATCAACTCTTCTTCGTCAGGTTTGCATGACTGTGATTTTAGCGCAGCTAGGAGCAGATGTTCCTGCAGAAAGCTTTGAGTTAACGCCTGTTGACCGTATCTTTGTTCGGATGGGAGCGAAGGATCATATTATGGCTGGTCAAAGTACATTCGTGATGGAACTCTCGGAGACTGCATCAATGCTGTCTTCTGCTACCCAAAATTCTCTAGTAGCACTAGATGAACTTGGACGAGGCACATCAACGTCTGATGGACAAGCTATTGCAGGATCTGTCTTAGAGCATTTGGTGCACAAAATACATTGCCGAGGGTTGTTTTCAACTCACTATCATCGACTAGCAGTAGAATATGAGAATGACAAAGAGGTATCATTGTTTCATATGGCTTGCCAAGTTGAGAAGGGGAACGGAGGCATTGAAGAAGTTACTTTCCTTTATAGATTGACTCCTGGTTCCTGTCCTAAAAGCTATGGTGTCAATGTTGCTCGGTTGGCAGGAATACCGTCTTCAGTTCTTGAAACTGCCACAAGAAAGTCCACTGAGTTTGAGATTAATTACGGGAAAGGAAAGAAAGAATCTCGAAGAGACTTTTCTGCCGCCATTAAGGATGAGGAAATAGCTGTCATCAAAGATTTTTTAGCCGCTGCCAAGAATTTGGATCAAGATGACAATACTCAGGCATTAAACATGCGTTTGCTTGAAGAAATTCATCAGAGGGCTCGATTGCTCGTTGGAAAGCGAAGAAGCCTCTTGCGCCTTTTTTGA
Protein:  
MGPSRRLSSNGRSPLVRKQSQITTFFSPGKNPTDSPCPKPNPSPNPNSSTEKSKKTPLLIPSPTKPNPKAPPSTTEKKSFSEDVVGKKISVFWPLDKTWYDGHVKSFNKLTGKHLIQYEDAEEEVLDLEKEKIEWVKEEAPRKLRRLKRVSSSPVPETEIVRDGVNVDDDDDGEDEDWGKGVGEHVDNDDSKEVELEEEIEEENEKSAAKRSGKRSSSSVGSGKRKKVDVEKLGCSKKFRFDGDGEGPGDGQKGGSLVTPMSKSRYSTVLTTKGNAGGQQVNNFGSNSTDDAAERFAKREAEKFRFLQGHRGRKDARGKRPEDADYDQRTLFLPSDFLKSLSGCQRQWWEFKSKHMDKVLLFKMGKFYELFEMDAHIGAKELGLQYMKGDQPHCGFPEKNFSTNLEKLARKGYRVLVVEQTETPQQLELRRKETGSKDKVVKREICAMVTKGTLIEGDSLLTNPDTSYLMSITEKSNFLENQKKESIVIGICLVDVSTSMFMLGQFEDDSERHCLCSILSELRPVEIIKPSELLSPETENVLKYHTRNPLINNLVPSAEFWDAKKTIDEIRNIHWVLTHSTSELSTYVNGDNSDNSDTSERHSGGLPDVLSEVVTAGPNECCTLSALGGCLFYLRQAFLEEALLKCAKFERLQCSGFSATAKRTHMILDAAALENLEILENKKNGGLSGTLFAQLNHCVTSNGKRMLKSWLARPLYNKSLILERQDAIAGLKGTGVASALEFRKELLRLPDMERLLARLFAICDSNGRNANRVVLYEDAAKKQLQEFIAALRGCEVMIQACSSLSTILTNTESSLLHHLLTPGKGLPDVSSVLKHFKEAFDWIEAERSGRIIPHEGGDIEYDTACKTLRDIESSLKSYLKEQRRILGDSSVTYATVGKDSYLLEVPESLSLSVPRGYELCSSKKGYVRYRTPEIKKYLSKLAQAEADRESKLKSILQRLLGQFSEHHNKWRLLVSVIAELDVLISLSISSDYYEGPTCRPVIKEICHSSANTPYISAKNLGHPVLRSDALGRGSFVPNDVNIGGAGHGTFILLTGPNMGGKSTLLRQVCMTVILAQLGADVPAESFELTPVDRIFVRMGAKDHIMAGQSTFVMELSETASMLSSATQNSLVALDELGRGTSTSDGQAIAGSVLEHLVHKIHCRGLFSTHYHRLAVEYENDKEVSLFHMACQVEKGNGGIEEVTFLYRLTPGSCPKSYGVNVARLAGIPSSVLETATRKSTEFEINYGKGKKESRRDFSAAIKDEEIAVIKDFLAAAKNLDQDDNTQALNMRLLEEIHQRARLLVGKRRSLLRLF